Tutorials

Basic Workflow	Run a standard analysis from raw counts to embeddings, clusters, and markers.
Integration and Label Transfer	Map an annotated reference onto a query and transfer its cell-type labels.
Differential Expression	Run pseudobulk differential expression between conditions with limma-voom.
Interoperability	Read and write the major single-cell file formats, or convert between tools in memory.
Data Manipulation	Access and reshape datasets.